Publications from 2008 to now
Showing entries 1 - 20 out of 359
2025
Markovski, M, Najdek, M, Zhao, Z, Herndl, GJ & Korlević, M 2025, 'Shift in the metabolic profile of sediment microbial communities during seagrass decline', Environmental Microbiome, vol. 20, no. 1, pp. 93. https://doi.org/10.1186/s40793-025-00750-1
Masdeu-Navarro, M, Cabrera-Brufau, M, Xue, L, Rodríguez-Ros, P, Gardner, SG, Bergauer, K, Posman, KM, Archer, SD, Herndl, GJ, Marrasé, C, Kieber, DJ & Simó, R 2025, 'The seascape of VOC production and cycling in a tropical coral reef', Elementa, vol. 13, no. 1, 00014. https://doi.org/10.1525/elementa.2025.00014
Hou, L, Zhao, Z, Steger-Mähnert, B, Jiao, N, Herndl, GJ & Zhang, Y 2025, 'Microbial metabolism in laboratory reared marine snow as revealed by a multi-omics approach', Microbiome, vol. 13, no. 1, 114, pp. 114. https://doi.org/10.1186/s40168-025-02097-8
Elena, AX, Orel, N, Fang, P, Herndl, GJ, Berendonk, TU, Tinta, T & Klümper, U 2025, 'Jellyfish blooms-an overlooked hotspot and potential vector for the transmission of antimicrobial resistance in marine environments', mSystems, vol. 10, no. 3, e0101224. https://doi.org/10.1128/msystems.01012-24
2024
Adenaya, A, Spriahailo, D, Berger, M, Noster, J, Milke, F, Schulz, C, Reinthaler, T, Poehlein, A, Wurl, O, Ribas-Ribas, M, Hamprecht, A & Brinkhoff, T 2024, 'Occurrence of antibiotic-resistant bacteria in the sea surface microlayer of coastal waters in the southern North Sea', Ecotoxicology and Environmental Safety, vol. 287, 117259. https://doi.org/10.1016/j.ecoenv.2024.117259
Saito, MA, Saunders, JK, McIlvin, MR, Bertrand, EM, Breier, JA, Brisbin, MM, Colston, SM, Compton, JR, Griffin, TJ, Hervey, WJ, Hettich, RL, Jagtap, PD, Janech, M, Johnson, R, Keil, R, Kleikamp, H, Leary, D, Martens, L, McCain, JSP, Moore, E, Mehta, S, Moran, DM, Neibauer, J, Neely, BA, Jakuba, MV, Johnson, J, Duffy, M, Herndl, GJ, Giannone, R, Mueller, R, Nunn, BL, Pabst, M, Peters, S, Rajczewski, A, Rowland, E, Searle, B, Van Den Bossche, T, Vora, GJ, Waldbauer, JR, Zheng, H & Zhao, Z 2024, 'Results from a multi-laboratory ocean metaproteomic intercomparison effects of LC-MS acquisition and data analysis procedures', Biogeosciences, vol. 21, no. 21, pp. 4889-4908. https://doi.org/10.5194/bg-21-4889-2024
Amaral, V, Forja, J, Steger-Mähnert, B, Herndl, GJ & Romera-Castillo, C 2024, 'Spatial distribution of dissolved free amino acids in three Iberian Atlantic estuaries', Marine Chemistry, vol. 267, 104456. https://doi.org/10.1016/j.marchem.2024.104456
Strniša, F, Tinta, T, Herndl, GJ & Kosec, G 2024, 'Dynamic population modeling of bacterioplankton community response to gelatinous marine zooplankton bloom collapse and its impact on marine nutrient balance', Progress in Oceanography, vol. 227, 103312. https://doi.org/10.1016/j.pocean.2024.103312
Winter, C, Griebler, C & Pleyer, D 2024, 'Virus production in shallow groundwater at the bank of the Danube River', PLoS ONE, vol. 19, no. 8, e0306346. <https://doi.org/10.1371/journal.pone.0306346>
Heneghan, RF, Holloway-Brown, J, Gasol, JM, Herndl, GJ, Morán, XAG & Galbraith, ED 2024, 'The global distribution and climate resilience of marine heterotrophic prokaryotes', Nature Communications, vol. 15, 6943, pp. 1-11. https://doi.org/10.1038/s41467-024-50635-z
Zhao, Z, Amano, C, Reinthaler, T, Baltar, F, Orellana, MV & Herndl, GJ 2024, 'Metaproteomic analysis decodes trophic interactions of microorganisms in the dark ocean', Nature Communications, vol. 15, no. 1, 6411, pp. 6411. https://doi.org/10.1038/s41467-024-50867-z
Jiao, N, Luo, T, Chen, Q, Zhao, Z, Xiao, X, Liu, J, Jian, Z, Xie, S, Thomas, H, Herndl, GJ, Benner, R, Gonsior, M, Chen, F, Cai, W-J & Robinson, C 2024, 'The microbial carbon pump and climate change', Nature Reviews. Microbiology, vol. 22, no. 7, pp. 408-419. https://doi.org/10.1038/s41579-024-01018-0
Chen, S, Xie, Z-X, Yan, K-Q, Chen, J-W, Li, D-X, Wu, P-F, Peng, L, Lin, L, Dong, C-M, Zhao, Z, Fan, G-Y, Liu, S-Q, Herndl, GJ & Wang, D-Z 2024, 'Functional vertical connectivity of microbial communities in the ocean', Science Advances, vol. 10, no. 21, adj8184. https://doi.org/10.1126/sciadv.adj8184
Zhao, Z, Baltar, F & Herndl, GJ 2024, 'Decoupling between the genetic potential and the metabolic regulation and expression in microbial organic matter cleavage across microbiomes', Microbiology Spectrum, vol. 12, no. 5, e0303623. https://doi.org/10.1128/spectrum.03036-23
Zhao, Z, Amano, C, Reinthaler, T, Orellana, MV & Herndl, GJ 2024, 'Substrate uptake patterns shape niche separation in marine prokaryotic microbiome', Science Advances, vol. 10, no. 20, eadn5143. https://doi.org/10.1126/sciadv.adn5143
Fadeev, E, Hennenfeind, JH, Amano, C, Zhao, Z, Klun, K, Herndl, GJ & Tinta, T 2024, 'Bacterial degradation of ctenophore Mnemiopsis leidyi organic matter', mSystems, vol. 9, no. 2, e01264-23. https://doi.org/10.1128/msystems.01264-23
Salazar-Alekseyeva, K, Herndl, GJ & Baltar, F 2024, 'Influence of Salinity on the Extracellular Enzymatic Activities of Marine Pelagic Fungi', Journal of Fungi, vol. 10, no. 2, 152. https://doi.org/10.3390/jof10020152
Orel, N, Fadeev, E, Herndl, GJ, Turk, V & Tinta, T 2024, 'Recovering high-quality bacterial genomes from cross-contaminated cultures: a case study of marine Vibrio campbellii', BMC Genomics, vol. 25, no. 1, 146. https://doi.org/10.1186/s12864-024-10062-2
Masdeu-Navarro, M, Mangot, JF, Xue, L, Cabrera-Brufau, M, Kieber, DJ, Rodríguez-Ros, P, Gardner, SG, Bergauer, K, Herndl, GJ, Marrasé, C & Simó, R 2024, 'Diel variation of seawater volatile organic compounds, DMSP-related compounds, and microbial plankton inside and outside a tropical coral reef ecosystem', Frontiers in Marine Science , vol. 11, 1341619. https://doi.org/10.3389/fmars.2024.1341619
2023
Tang, W, Ward, BB, Beman, M, Bristow, L, Clark, D, Fawcett, S, Frey, C, Fripiat, F, Herndl, GJ, Mdutyana, M, Paulot, F, Peng, X, Santoro, AE, Shiozaki, T, Sintes, E, Stock, C, Sun, X, Wan, XS, Xu, MN & Zhang, Y 2023, 'Database of nitrification and nitrifiers in the global ocean', Earth System Science Data, vol. 15, no. 11, pp. 5036-5077. https://doi.org/10.5194/essd-15-5039-2023