Genome wide transcriptomic analysis of the soil ammonia oxidizing archaeon Nitrososphaera viennensis upon exposure to copper limitation
- Author(s)
- Carolina Reyes, Logan Hodgskiss, Melina Kerou, Thomas Pribasnig, Sophie Abby, Barbara Bayer, Stephan Krämer, Christa Schleper
- Abstract
The goal of the project was to determine the types of genes the archaeon N. viennensis expressed when grown in copper limited conditions. The purpose of the project was to try and elucidate potentially novel copper uptake pathways. Cultures of N. viennensis were grown under Cu-limited and Cu-replete conditions. The total RNA was extracted from cells grown in each condition and sequenced using the Illumina HiSeqV4 SR50 platform.
- Organisation(s)
- Department of Environmental Geosciences, Functional and Evolutionary Ecology, Department of Microbiology and Ecosystem Science
- External organisation(s)
- University of Grenoble Alpes
- Journal
- The ISME Journal: multidisciplinary journal of microbial ecology
- Volume
- 14
- Pages
- 2659–2674
- No. of pages
- 16
- ISSN
- 1751-7362
- DOI
- https://doi.org/10.1038/s41396-020-0715-2
- Publication date
- 11-2020
- Peer reviewed
- Yes
- Austrian Fields of Science 2012
- 106022 Microbiology
- Keywords
- ASJC Scopus subject areas
- Ecology, Evolution, Behavior and Systematics, Microbiology
- Portal url
- https://ucris.univie.ac.at/portal/en/publications/genome-wide-transcriptomic-analysis-of-the-soil-ammonia-oxidizing-archaeon-nitrososphaera-viennensis-upon-exposure-to-copper-limitation(9b43cda3-8a0d-4a7a-bc43-8bb654c8a0aa).html