Marine microbial metagenomes sampled across space and time

Author(s)
Steven J. Biller, Paul M. Berube, Keven Dooley, Madeline Williams, Brandon M. Satinsky, Thomas Hackl, Shane L. Hogle, Allison Coe, Kristin Bergauer, Heather A. Bouman, Thomas J. Browning, Daniele De Corte, Christel Hassler, Debbie Hulston, Jeremy E. Jacquot, Elizabeth W. Maas, Thomas Reinthaler, Eva Sintes, Taichi Yokokawa, Sallie W. Chisholm
Abstract

Recent advances in understanding the ecology of marine systems have been greatly facilitated by the growing availability of metagenomic data, which provide information on the identity, diversity and functional potential of the microbial community in a particular place and time. Here we present a dataset comprising over 5 terabases of metagenomic data from 610 samples spanning diverse regions of the Atlantic and Pacific Oceans. One set of metagenomes, collected on GEOTRACES cruises, captures large geographic transects at multiple depths per station. The second set represents two years of time-series data, collected at roughly monthly intervals from 3 depths at two long-term ocean sampling sites, Station ALOHA and BATS. These metagenomes contain genomic information from a diverse range of bacteria, archaea, eukaryotes and viruses. The data's utility is strengthened by the availability of extensive physical, chemical, and biological measurements associated with each sample. We expect that these metagenomes will facilitate a wide range of comparative studies that seek to illuminate new aspects of marine microbial ecosystems.

Organisation(s)
Department of Limnology and Bio-Oceanography
External organisation(s)
Massachusetts Institute of Technology, Wellesley College, University of Oxford, GEOMAR Helmholtz-Zentrum für Ozeanforschung, Japan Agency for Marine-Earth Science and Technology, Université de Genève, National Institute of Water and Atmospheric Research, University of Southern California, Ministry For Primary Industries
Journal
Scientific Data
Volume
5
No. of pages
7
ISSN
2052-4463
DOI
https://doi.org/10.1038/sdata.2018.176
Publication date
09-2018
Peer reviewed
Yes
Austrian Fields of Science 2012
Marine biology, Microbiology
Keywords
Portal url
https://ucris.univie.ac.at/portal/en/publications/marine-microbial-metagenomes-sampled-across-space-and-time(3528d556-794b-484a-a27e-899b9fb7f9bc).html